Publikationen

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Nabeel Khalid; Anwai Archit; Luca Freckmann; Sushmita Nair; Paul Hilt; Vikas Rajashekar; Marei Freitag; Carolin Teuber; Genevieve Buckley; Sebastian von Haaren; Sagnik Gupta; Andreas Dengel; Sheraz Ahmed; Constantin Pape
Segment Anything for Microscopy
In: Nature, Vol. 22, Pages 579-591, Nature Methods, 2/2025.
Nabeel Khalid; Mohammadmahdi Koochali; Khola Naseem; Maria Caropresse; Gillian Lovel; Daniel A Porto; Johan Trygg; Andreas Dengel; Sheraz Ahmed
SAT: Segment and Track Anything for Microscopy
In: 17th International Conference on Agents and Artificial Intelligence. International Conference on Agents and Artificial Intelligence (ICAART-2025), February 23-25, Porto, Portugal, SCITEPRESS Digital Library, 2/2025.
Khola Naseem; Nabeel Khalid; Lea Bertgen; Johannes M Herrmann; Andreas Dengel; Sheraz Ahmed
YeastFormer: An End-to-End Instance Segmentation Approach for Yeast Cells in Microstructure Environment
In: Proceedings of the 17th International Conference on Agents and Artificial Intelligence. International Conference on Agents and Artificial Intelligence (ICAART-2025), 17th International Conference on Agents and Artificial Intelligence, located at ICAART 2025, February 23-25, Porto, Portugal, SCITEPRESS, 2/2025.
Nabeel Khalid; Mohammadmahdi Koochali; Khola Naseem; Gillian Lovel; Daniel A Porto; Biana Migliori; Johan Trygg; Andreas Dengel; Sheraz Ahmed
Box it and Track it: A Weakly Supervised Framework for Cell Tracking
In: DAGM German Conference on Pattern Recognition, Freiburg. Annual Symposium of the German Association for Pattern Recognition (DAGM-2025), September 24-26, Freiburg, Germany, Springer Nature, 2025.
Nabeel Khalid; Maria Caropresse; Gillian Lovell; Andreas Dengel; Sheraz Ahmed
CellSpot: Deep Learning-Based Efficient Cell Center Detection in Microscopic Images
In: 33rd International Conference on Artificial Neural Networks ICANN. International Conference on Artificial Neural Networks (ICANN-2024), September 17-20, Lugano, Switzerland, Springer Nature, Switzerland, 9/2024.
Nabeel Khalid; Mohammadmahdi Koochali; Duway Nicolas Lesmes Leon; Maria Caroprese; Gillian Lovell; Daniel A Porto; Johan Trygg; Andreas Dengel; Sheraz Ahmed
CellGenie: An end-to-end Pipeline for Synthetic Cellular Data Generation and Segmentation: A Use Case for Cell Segmentation in Microscopic Images
In: 28th UK Conference on Medical Image Understanding and Analysis - MIUA. Medical Image Understanding and Analysis (MIUA-2024), Spriner Nature, 8/2024.
Nabeel Khalid; Maria Caroprese; Gillian Lovell; Daniel A Porto; Johan Trygg; Andreas Dengel; Sheraz Ahmed
Bounding Box is all you need: Learning to Segment Cells in 2D Microscopic Images via Box Annotations
In: 28th UK Conference on Medical Image Understanding and Analysis - MIUA. Medical Image Understanding and Analysis (MIUA-2024), Spriner Nature, 8/2024.
Nabeel Khalid; Tiago Comassetto Froes; Maria Caroprese; Gillian Lovell; Johan Trygg; Andreas Dengel; Sheraz Ahmed
PACE: Point Annotation-Based Cell Segmentation for Efficient Microscopic Image Analysis
In: ICANN 2023. International Conference on Artificial Neural Networks (ICANN-2023), 32nd International Conference on Artificial Neural Networks, located at ICANN 2023, September 26-29, Heraklion, Crete, Greece, Springer, 9/2023.
Nabeel Khalid; Fabian Schmeisser; Mohammadmahdi Koochali; Mohsin Munir; Christoffer Edlund; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed
Point2Mask: A Weakly Supervised Approach for Cell Segmentation using Point Annotation
In: 2022 Annual Conference on Medical Image Understanding and Analysis. Medical Image Understanding and Analysis (MIUA-2022), July 25-29, Cambridge, United Kingdom, MIUA, 2022.
Nabeel Khalid; Mohammadmahdi Koochali; Vikas Rajashekar; Mohsin Munir; Christoffer Edlund; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed
DeepMuCS: A Framework for Co-culture Microscopic Image Analysis: From Generation to Segmentation
In: 2022 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI). IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI-2022), September 27-30, Ioannina, Greece, IEEE BHI-BSN 2022, 2022.